Causal Graph Interface
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Documentation for package ‘caugi’ version 1.0.0
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A B C D E F G H I K L M N P R S T V W
-- A --
| add-caugi_plot-caugi_plot | Compose Plots Horizontally |
| add_edges | Manipulate nodes and edges of a 'caugi' |
| add_nodes | Manipulate nodes and edges of a 'caugi' |
| adjustment_set | Compute an adjustment set |
| aid | Adjustment Identification Distance |
| all_adjustment_sets_admg | Get all valid adjustment sets in an ADMG |
| all_backdoor_sets | Get all backdoor sets up to a certain size. |
| ancestors | Get ancestors of nodes in a 'caugi' |
| anteriors | Get anteriors of nodes in a 'caugi' |
| as_adjacency | Convert a caugi to an adjacency matrix |
| as_bnlearn | Convert a caugi to a bnlearn network |
| as_caugi | Convert to a 'caugi' |
| as_dagitty | Convert a caugi to a dagitty graph |
| as_igraph | Convert a caugi to an igraph object |
-- B --
| build | Build the graph now |
-- C --
| caugi | Create a 'caugi' from edge expressions. |
| caugi_default_options | Default options for caugi |
| caugi_deserialize | Deserialize caugi Graph from JSON String |
| caugi_dot | S7 Class for DOT Export |
| caugi_export | S7 Base Class for Caugi Exports |
| caugi_graphml | S7 Class for GraphML Export |
| caugi_layout | Compute Graph Layout |
| caugi_layout_bipartite | Bipartite Graph Layout |
| caugi_layout_fruchterman_reingold | Fruchterman-Reingold Force-Directed Layout |
| caugi_layout_kamada_kawai | Kamada-Kawai Stress Minimization Layout |
| caugi_layout_sugiyama | Sugiyama Hierarchical Layout |
| caugi_layout_tiered | Tiered Graph Layout |
| caugi_mermaid | S7 Class for Mermaid Export |
| caugi_options | Get or set global options for caugi |
| caugi_plot | S7 Class for caugi Plot |
| caugi_registry | 'caugi' edge registry |
| caugi_serialize | Serialize caugi Graph to JSON String |
| caugi_verbs | Manipulate nodes and edges of a 'caugi' |
| children | Get children of nodes in a 'caugi' |
| condition_marginalize | Marginalize and/or condition on variables in an ancestral graph (AG) |
-- D --
| descendants | Get descendants of nodes in a 'caugi' |
| districts | Get districts (c-components) of an ADMG |
| divide-caugi_plot-caugi_plot | Compose Plots Vertically |
| d_separated | Are X and Y d-separated given Z? |
-- E --
| E | Get edges of a 'caugi'. |
| edges | Get edges of a 'caugi'. |
| edge_types | Get the edge types of a 'caugi'. |
| exogenize | Exogenize a graph |
| exogenous | Get all exogenous nodes in a 'caugi' |
| export-classes | Export Format Classes |
-- F --
| format-caugi | Caugi Native Format Serialization |
| format-dot | DOT Format Export and Import |
| format-graphml | GraphML Format Export and Import |
| format-mermaid | Mermaid Format Export |
-- G --
| generate_graph | Generate a 'caugi' using Erdős-Rényi. |
-- H --
| hd | Hamming Distance |
-- I --
| is_acyclic | Is the 'caugi' acyclic? |
| is_admg | Is the 'caugi' graph an ADMG? |
| is_ag | Is the 'caugi' graph an AG? |
| is_caugi | Is it a 'caugi' graph? |
| is_cpdag | Is the 'caugi' graph a CPDAG? |
| is_dag | Is the 'caugi' graph a DAG? |
| is_empty_caugi | Is the 'caugi' graph empty? |
| is_mag | Is the 'caugi' graph a MAG? |
| is_pdag | Is the 'caugi' graph a PDAG? |
| is_ug | Is the 'caugi' graph an UG? |
| is_valid_adjustment_admg | Is a set a valid adjustment set in an ADMG? |
| is_valid_backdoor | Is a backdoor set valid? |
-- K --
| knit_print.caugi_export | Knit Print Method for caugi_export |
-- L --
| latent_project | Project latent variables from a DAG to an ADMG |
| length | Length of a 'caugi' |
-- M --
| markov_blanket | Get Markov blanket of nodes in a 'caugi' |
| moralize | Moralize a DAG |
| mutate_caugi | Mutate 'caugi' class |
| m_separated | M-separation test for AGs and ADMGs |
-- N --
| neighbors | Get neighbors of nodes in a 'caugi' |
| neighbours | Get neighbors of nodes in a 'caugi' |
| nodes | Get nodes or edges of a 'caugi' |
-- P --
| parents | Get parents of nodes in a 'caugi' |
| pipe-caugi_plot-caugi_plot | Compose Plots Horizontally |
| plot | Create a caugi Graph Plot Object |
| Print a 'caugi' |
-- R --
| read_caugi | Read caugi Graph from File |
| read_graphml | Read GraphML File to caugi Graph |
| register_caugi_edge | Register a new edge type in the global registry. |
| registry | 'caugi' edge registry |
| remove_edges | Manipulate nodes and edges of a 'caugi' |
| remove_nodes | Manipulate nodes and edges of a 'caugi' |
| reset_caugi_registry | 'caugi' edge registry |
-- S --
| same_nodes | Same nodes? |
| seal_caugi_registry | 'caugi' edge registry |
| set_edges | Manipulate nodes and edges of a 'caugi' |
| shd | Structural Hamming Distance |
| simulate_data | Simulate data from a 'caugi' DAG. |
| skeleton | Get the skeleton of a graph |
| spouses | Get spouses (bidirected neighbors) of nodes in an ADMG |
| subgraph | Get the induced subgraph |
-- T --
| topological_sort | Get a topological ordering of a DAG |
| to_dot | Export caugi Graph to DOT Format |
| to_graphml | Export caugi Graph to GraphML Format |
| to_mermaid | Export caugi Graph to Mermaid Format |
-- V --
| V | Get nodes or edges of a 'caugi' |
| vertices | Get nodes or edges of a 'caugi' |
-- W --
| write_caugi | Write caugi Graph to File |
| write_dot | Write caugi Graph to DOT File |
| write_graphml | Write caugi Graph to GraphML File |
| write_mermaid | Write caugi Graph to Mermaid File |